STRINGSTRING
Psed_4030 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4030" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4030Hypothetical protein (242 aa)    
Predicted Functional Partners:
Psed_4031
Iron-sulfur cluster binding protein (488 aa)
 
  0.999
Psed_4589
Succinate dehydrogenase and fumarate reductase iron-sulfur protein (256 aa)
 
 
 
  0.853
Psed_4122
L-lactate transport (577 aa)
 
   
  0.791
Psed_4029
GntR family transcriptional regulator (229 aa)
         
  0.723
Psed_4783
D-lactate dehydrogenase (484 aa)
 
   
  0.698
Psed_4788
D-lactate dehydrogenase (483 aa)
 
   
  0.697
Psed_4784
FAD linked oxidase domain-containing protein (388 aa)
 
   
  0.672
Psed_5593
D-lactate dehydrogenase (982 aa)
   
   
  0.658
Psed_5022
D-lactate dehydrogenase (490 aa)
   
   
  0.658
Psed_2201
D-lactate dehydrogenase (444 aa)
   
   
  0.658
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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