STRINGSTRING
Psed_4040 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4040" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4040Hypothetical protein (228 aa)    
Predicted Functional Partners:
Psed_4290
Alpha/beta hydrolase (234 aa)
   
          0.774
Psed_0072
Hypothetical protein (234 aa)
   
          0.774
Psed_4039
Cysteine synthase (373 aa)
              0.689
Psed_4971
Glyoxalase/bleomycin resistance protein/dioxygenase (178 aa)
   
          0.649
Psed_6455
Hypothetical protein (233 aa)
   
          0.637
Psed_4394
Hypothetical protein (234 aa)
 
          0.561
Psed_3730
Carboxymuconolactone decarboxylase (186 aa)
   
          0.473
Psed_3967
GCN5-like N-acetyltransferase (365 aa)
   
          0.420
Psed_2490
TetR family transcriptional regulator (215 aa)
   
          0.410
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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