STRINGSTRING
Psed_4046 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4046" - Ser/Thr phosphatase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4046Ser/Thr phosphatase (619 aa)    
Predicted Functional Partners:
Psed_4045
Cobalamin B12-binding domain-containing protein (357 aa)
          0.964
Psed_0704
GAF sensor-containing protein serine/threonine phosphatase (419 aa)
 
          0.775
Psed_2425
FliA/WhiG subfamily RNA polymerase sigma-28 subunit (273 aa)
 
     
  0.678
Psed_3478
SigB/F/G subfamily RNA polymerase sigma-28 subunit (296 aa)
 
     
  0.638
Psed_1528
Anti-sigma factor (150 aa)
     
 
  0.629
Psed_2380
SigB/F/G subfamily RNA polymerase sigma-28 subunit (303 aa)
 
     
  0.614
Psed_1527
SigB/F/G subfamily RNA polymerase sigma-28 subunit (259 aa)
 
     
  0.601
Psed_3147
SigB/F/G subfamily RNA polymerase sigma-28 subunit (288 aa)
 
     
  0.555
Psed_0435
Histidine kinase (596 aa)
 
   
  0.549
Psed_2505
SigB/F/G subfamily RNA polymerase sigma-28 subunit (283 aa)
 
     
  0.544
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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