STRINGSTRING
Psed_4057 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4057" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4057Hypothetical protein (783 aa)    
Predicted Functional Partners:
Psed_3990
Beta-lactamase domain-containing protein (372 aa)
     
      0.677
Psed_0431
Beta-lactamase domain-containing protein (234 aa)
     
      0.677
Psed_4056
Sua5/YciO/YrdC/YwlC family protein (206 aa)
              0.657
Psed_5585
Glyoxalase/bleomycin resistance protein/dioxygenase (144 aa)
 
          0.650
Psed_1173
Lytic transglycosylase catalytic (269 aa)
   
          0.570
Psed_6235
Polyketide cyclase/dehydrase (180 aa)
   
          0.562
Psed_4058
Regulatory protein DeoR (319 aa)
              0.552
Psed_0313
Glyoxalase/bleomycin resistance protein/dioxygenase (135 aa)
 
          0.551
Psed_4998
Hypothetical protein (147 aa)
   
          0.479
Psed_3111
Hemerythrin HHE cation binding domain-containing protein (199 aa)
   
          0.470
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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