STRINGSTRING
Psed_4062 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4062" - Major facilitator superfamily protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4062Major facilitator superfamily protein (409 aa)    
Predicted Functional Partners:
Psed_4061
Xenobiotic-transporting ATPase (618 aa)
              0.586
Psed_4060
Xenobiotic-transporting ATPase (631 aa)
              0.586
Psed_4064
Hypothetical protein (139 aa)
              0.536
Psed_4063
Trehalose synthase (741 aa)
              0.536
Psed_3263
AraC family transcriptional regulator (247 aa)
   
        0.530
Psed_1921
AraC family transcriptional regulator (256 aa)
   
        0.530
Psed_3105
Hypothetical protein (377 aa)
   
        0.459
Psed_6209
GntR family transcriptional regulator (252 aa)
              0.412
Psed_5909
GntR family transcriptional regulator (239 aa)
              0.412
Psed_4913
GntR family transcriptional regulator (255 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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