STRINGSTRING
Psed_4063 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4063" - Trehalose synthase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4063Trehalose synthase (741 aa)    
Predicted Functional Partners:
Psed_3647
Phosphoglucomutase, alpha-D-glucose phosphate-specific (553 aa)
   
   
    0.913
Psed_5288
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I (530 aa)
         
    0.900
Psed_5201
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II (451 aa)
         
    0.900
Psed_2707
Aldose-1-epimerase (299 aa)
         
    0.900
Psed_4064
Hypothetical protein (139 aa)
              0.859
Psed_1907
Hypothetical protein (573 aa)
   
          0.609
Psed_6586
Hypothetical protein (521 aa)
   
          0.579
Psed_1876
O-antigen polymerase (674 aa)
   
          0.557
Psed_4062
Major facilitator superfamily protein (409 aa)
              0.536
Psed_3947
Transcriptional regulator (105 aa)
   
          0.521
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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