STRINGSTRING
Psed_4065 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4065" - Peptidase M28 in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4065Peptidase M28 (748 aa)    
Predicted Functional Partners:
Psed_0921
Hypothetical protein (116 aa)
   
          0.752
Psed_4588
Hypothetical protein (117 aa)
   
          0.662
Psed_2823
Abortive infection protein (244 aa)
 
          0.649
Psed_2630
Xenobiotic-transporting ATPase (600 aa)
   
 
    0.629
Psed_4066
Type III restriction protein res subunit (1028 aa)
   
        0.617
Psed_1679
ATP synthase subunit c (91 aa)
     
 
    0.590
Psed_6591
Molecular chaperone DnaK (655 aa)
     
    0.568
Psed_6555
Molecular chaperone DnaK; Acts as a chaperone (618 aa)
     
    0.568
Psed_3485
Molecular chaperone DnaK; Acts as a chaperone (628 aa)
     
    0.568
Psed_3005
Hypothetical protein (872 aa)
     
    0.568
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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