STRINGSTRING
Psed_4071 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4071" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4071Hypothetical protein (270 aa)    
Predicted Functional Partners:
Psed_0842
Hypothetical protein (144 aa)
   
          0.644
Psed_4072
Hypothetical protein (119 aa)
              0.570
Psed_2984
HhH-GPD family protein (210 aa)
   
          0.535
Psed_0209
Hypothetical protein (184 aa)
   
          0.516
Psed_2148
Haloacid dehalogenase (243 aa)
   
          0.476
Psed_1778
Hypothetical protein (97 aa)
   
          0.461
Psed_2793
Type 12 methyltransferase (235 aa)
   
          0.458
Psed_1956
FhuF/siderophore biosynthesis protein (289 aa)
   
          0.457
Psed_5928
Hypothetical protein (164 aa)
   
          0.449
Psed_4522
Hypothetical protein (197 aa)
   
          0.443
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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