STRINGSTRING
Psed_4074 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4074" - Alpha/beta hydrolase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4074Alpha/beta hydrolase (255 aa)    
Predicted Functional Partners:
Psed_0344
Alpha/beta hydrolase (253 aa)
   
          0.768
Psed_2261
Alpha/beta hydrolase (263 aa)
   
          0.763
Psed_5284
Alpha/beta hydrolase (272 aa)
   
          0.761
Psed_2169
Alpha/beta hydrolase (274 aa)
   
          0.759
Psed_6052
3-oxoadipate enol-lactonase (284 aa)
   
          0.738
Psed_2266
Alpha/beta hydrolase (283 aa)
   
          0.713
Psed_1612
Alpha/beta hydrolase (283 aa)
   
          0.690
Psed_0292
Alpha/beta hydrolase (282 aa)
   
          0.683
Psed_4129
Alpha/beta hydrolase (261 aa)
   
          0.678
Psed_5368
Alpha/beta hydrolase (374 aa)
   
          0.660
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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