STRINGSTRING
Psed_4084 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4084" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4084Hypothetical protein (111 aa)    
Predicted Functional Partners:
Psed_4085
Glyoxalase/bleomycin resistance protein/dioxygenase (124 aa)
              0.646
Psed_4461
Hypothetical protein (116 aa)
   
          0.637
Psed_3269
Hypothetical protein (84 aa)
   
          0.567
Psed_0186
Hypothetical protein (573 aa)
   
          0.560
Psed_0895
Hypothetical protein (145 aa)
   
          0.555
Psed_2348
Hypothetical protein (385 aa)
   
          0.524
Psed_1020
Polyketide cyclase/dehydrase (160 aa)
   
          0.477
Psed_2460
Hypothetical protein (215 aa)
   
          0.471
Psed_5440
Hypothetical protein (383 aa)
   
          0.465
Psed_5441
Hypothetical protein (193 aa)
   
          0.461
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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