STRINGSTRING
Psed_4103 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4103" - 4-coumarate--CoA ligase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_41034-coumarate--CoA ligase (575 aa)    
Predicted Functional Partners:
Psed_5577
Isochorismate synthase (401 aa)
 
 
  0.824
Psed_0055
Non-ribosomal peptide synthetase domain-containing protein (1333 aa)
   
  0.803
Psed_2922
o-succinylbenzoate--CoA ligase (528 aa)
 
          0.773
Psed_3001
Non-ribosomal peptide synthetase domain-containing protein (2056 aa)
 
   
0.756
Psed_0252
Amino acid adenylation protein (7912 aa)
 
   
0.755
Psed_6162
Balhimycin biosynthetic protein MbtH (74 aa)
   
   
  0.730
Psed_4102
Hypothetical protein (85 aa)
              0.697
Psed_4104
NADPH dehydrogenase (359 aa)
              0.577
Psed_4101
3-oxoacyl-ACP reductase (265 aa)
              0.535
Psed_6053
Hypothetical protein (160 aa)
   
          0.507
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (9%) [HD]