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Psed_4110 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4110" - MmgE/PrpD family protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4110MmgE/PrpD family protein (466 aa)    
Predicted Functional Partners:
Psed_4109
HpcH/HpaI aldolase (288 aa)
 
        0.935
Psed_4111
formyl-CoA transferase (394 aa)
 
          0.886
Psed_4112
butyryl-CoA dehydrogenase (383 aa)
 
        0.825
Psed_6532
Citrate synthase (271 aa)
 
 
  0.796
Psed_2071
MmgE/PrpD family protein (445 aa)
   
          0.778
Psed_0613
Citrate synthase I (434 aa)
   
 
  0.765
Psed_0610
Citrate (Si)-synthase (390 aa)
   
 
  0.765
Psed_4635
Isocitrate lyase and phosphorylmutase (300 aa)
 
   
  0.702
Psed_4113
Acyl dehydratase MaoC (169 aa)
   
   
  0.651
Psed_5247
Hypothetical protein (274 aa)
   
   
  0.648
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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