STRINGSTRING
Psed_4111 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4111" - formyl-CoA transferase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4111formyl-CoA transferase (394 aa)    
Predicted Functional Partners:
Psed_4112
butyryl-CoA dehydrogenase (383 aa)
 
   
  0.942
Psed_4109
HpcH/HpaI aldolase (288 aa)
 
   
  0.931
Psed_4110
MmgE/PrpD family protein (466 aa)
 
          0.886
Psed_3066
Hypothetical protein (302 aa)
 
        0.809
Psed_4113
Acyl dehydratase MaoC (169 aa)
   
   
  0.738
Psed_0649
3-hydroxybutyryl-CoA epimerase (720 aa)
   
   
  0.699
Psed_1576
butyryl-CoA dehydrogenase (388 aa)
 
   
  0.687
Psed_4168
citryl-CoA lyase (282 aa)
 
   
  0.677
Psed_4108
IclR family transcriptional regulator (253 aa)
         
  0.645
Psed_5276
citryl-CoA lyase (266 aa)
   
   
  0.628
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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