STRINGSTRING
Psed_4135 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4135" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4135TetR family transcriptional regulator (196 aa)    
Predicted Functional Partners:
Psed_5007
Hypothetical protein (201 aa)
   
          0.778
Psed_1568
TetR family transcriptional regulator (262 aa)
   
          0.735
Psed_4134
Luciferase-like protein (318 aa)
              0.653
Psed_6000
Helix-turn-helix domain-containing protein (290 aa)
   
          0.558
Psed_4133
GAF domain-containing protein (613 aa)
              0.515
Psed_4132
Transcriptional regulator CdaR (647 aa)
              0.495
Psed_5936
Alkyl hydroperoxide reductase (222 aa)
   
          0.491
Psed_5251
Hypothetical protein (217 aa)
   
          0.484
Psed_0552
Hypothetical protein (232 aa)
   
          0.479
Psed_5885
TetR family transcriptional regulator (198 aa)
   
          0.465
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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