STRINGSTRING
Psed_4157 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4157" - Major facilitator superfamily protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4157Major facilitator superfamily protein (395 aa)    
Predicted Functional Partners:
Psed_2321
Sugar ABC transporter substrate-binding protein (395 aa)
   
          0.557
Psed_4182
Alpha/beta hydrolase (289 aa)
   
          0.516
Psed_3028
Sugar ABC transporter substrate-binding protein (393 aa)
   
          0.511
Psed_4158
Hydroxymethylglutaryl-CoA lyase (329 aa)
              0.499
Psed_4200
MmgE/PrpD family protein (482 aa)
   
          0.462
Psed_5324
Hypothetical protein (254 aa)
   
          0.454
Psed_5323
Hypothetical protein (735 aa)
   
          0.453
Psed_3869
ECF subfamily RNA polymerase sigma-24 subunit (293 aa)
   
          0.437
Psed_1300
Cytochrome c biogenesis protein transmembrane region (288 aa)
   
          0.423
Psed_0710
Flavodoxin/nitric oxide synthase (181 aa)
   
          0.411
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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