STRINGSTRING
Psed_4163 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4163" - Sugar ABC transporter substrate-binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4163Sugar ABC transporter substrate-binding protein (393 aa)    
Predicted Functional Partners:
Psed_4161
ABC transporter permease (371 aa)
 
   
    0.987
Psed_4162
Monosaccharide-transporting ATPase (520 aa)
 
   
    0.976
Psed_4170
ABC transporter permease (343 aa)
 
   
    0.971
Psed_3026
ABC transporter permease (344 aa)
 
   
    0.971
Psed_0682
ABC transporter permease (339 aa)
 
   
    0.970
Psed_3190
ABC transporter permease (366 aa)
 
   
    0.952
Psed_4171
Monosaccharide-transporting ATPase (544 aa)
 
   
    0.951
Psed_3027
Monosaccharide-transporting ATPase (524 aa)
 
   
    0.948
Psed_2958
Hypothetical protein (340 aa)
   
   
    0.947
Psed_2260
ABC transporter permease (336 aa)
   
   
    0.946
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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