STRINGSTRING
Psed_4165 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4165" - GntR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4165GntR family transcriptional regulator (245 aa)    
Predicted Functional Partners:
Psed_4164
Dihydropyrimidinase (481 aa)
              0.829
Psed_4169
Dihydroxy-acid dehydratase (560 aa)
              0.794
Psed_0098
GntR family transcriptional regulator (249 aa)
   
          0.778
Psed_4168
citryl-CoA lyase (282 aa)
              0.676
Psed_4166
Chitin deacetylase (425 aa)
              0.675
Psed_4167
Alpha/beta hydrolase (264 aa)
              0.674
Psed_4170
ABC transporter permease (343 aa)
 
          0.664
Psed_6028
D-lactate dehydrogenase (1050 aa)
   
   
  0.655
Psed_5593
D-lactate dehydrogenase (982 aa)
   
   
  0.655
Psed_4952
D-lactate dehydrogenase (929 aa)
   
   
  0.655
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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