STRINGSTRING
Psed_4167 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4167" - Alpha/beta hydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4167Alpha/beta hydrolase (264 aa)    
Predicted Functional Partners:
Psed_4169
Dihydroxy-acid dehydratase (560 aa)
              0.859
Psed_4168
citryl-CoA lyase (282 aa)
              0.859
Psed_4166
Chitin deacetylase (425 aa)
              0.859
Psed_4172
Sugar ABC transporter substrate-binding protein (391 aa)
              0.767
Psed_4171
Monosaccharide-transporting ATPase (544 aa)
              0.767
Psed_4170
ABC transporter permease (343 aa)
              0.767
Psed_4173
Isochorismatase hydrolase (217 aa)
              0.674
Psed_4165
GntR family transcriptional regulator (245 aa)
              0.674
Psed_4174
formyl-CoA transferase (398 aa)
              0.656
Psed_4164
Dihydropyrimidinase (481 aa)
              0.652
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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