STRINGSTRING
Psed_4172 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4172" - Sugar ABC transporter substrate-binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4172Sugar ABC transporter substrate-binding protein (391 aa)    
Predicted Functional Partners:
Psed_4170
ABC transporter permease (343 aa)
 
   
    0.994
Psed_4171
Monosaccharide-transporting ATPase (544 aa)
 
   
    0.982
Psed_3026
ABC transporter permease (344 aa)
 
   
    0.965
Psed_4161
ABC transporter permease (371 aa)
 
   
    0.960
Psed_0682
ABC transporter permease (339 aa)
 
   
    0.936
Psed_3027
Monosaccharide-transporting ATPase (524 aa)
 
   
    0.874
Psed_4162
Monosaccharide-transporting ATPase (520 aa)
 
   
    0.867
Psed_2259
Monosaccharide-transporting ATPase (827 aa)
 
   
    0.850
Psed_3191
Monosaccharide-transporting ATPase (514 aa)
 
   
    0.846
Psed_3190
ABC transporter permease (366 aa)
 
   
    0.844
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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