STRINGSTRING
Psed_4175 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4175" - Chitin deacetylase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4175Chitin deacetylase (313 aa)    
Predicted Functional Partners:
Psed_1767
Hydroxyisourate hydrolase (98 aa)
 
   
  0.875
Psed_5694
Family 2 glycosyl transferase (511 aa)
   
   
  0.840
Psed_5325
Family 2 glycosyl transferase (387 aa)
   
   
  0.840
Psed_0574
Polysaccharide deacetylase (735 aa)
   
   
  0.840
Psed_0571
Polysaccharide deacetylase (899 aa)
   
   
  0.840
Psed_1769
Xanthine permease (619 aa)
 
   
  0.807
Psed_1761
S-adenosylhomocysteine deaminase (444 aa)
 
        0.713
alc
Allantoicase (309 aa)
 
        0.663
Psed_1768
OHCU decarboxylase (158 aa)
 
        0.620
Psed_3588
DNA polymerase I (939 aa)
         
  0.607
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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