STRINGSTRING
Psed_4185 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4185" - IclR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4185IclR family transcriptional regulator (284 aa)    
Predicted Functional Partners:
Psed_3758
IclR family transcriptional regulator (256 aa)
   
          0.778
Psed_0124
IclR family transcriptional regulator (262 aa)
   
          0.778
Psed_2323
IclR family transcriptional regulator (213 aa)
   
          0.745
Psed_4183
Peptidase M20 (460 aa)
              0.602
Psed_4182
Alpha/beta hydrolase (289 aa)
              0.593
Psed_4184
NADPH dehydrogenase (957 aa)
         
  0.591
Psed_4181
Type 11 methyltransferase (371 aa)
              0.546
Psed_4180
Hypothetical protein (89 aa)
              0.544
Psed_3035
3-oxoacid CoA-transferase subunit A (482 aa)
         
  0.526
Psed_4186
2,4-dienoyl-CoA reductase (673 aa)
         
  0.489
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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