STRINGSTRING
Psed_4187 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4187" - Type 11 methyltransferase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4187Type 11 methyltransferase (360 aa)    
Predicted Functional Partners:
Psed_4189
Hypothetical protein (137 aa)
 
          0.955
Psed_4190
Nmt1/thi5 like domain-containing protein (375 aa)
 
          0.922
Psed_4188
Hypothetical protein (103 aa)
              0.866
Psed_4195
Alpha/beta hydrolase (276 aa)
 
          0.857
Psed_4182
Alpha/beta hydrolase (289 aa)
 
          0.778
Psed_4193
3-oxoacyl-ACP reductase (249 aa)
 
          0.761
Psed_4191
Taurine-transporting AtPase (276 aa)
              0.699
Psed_4194
Peptidase dimerization domain-containing protein (472 aa)
 
          0.695
Psed_4186
2,4-dienoyl-CoA reductase (673 aa)
 
          0.690
Psed_1446
Hypothetical protein (159 aa)
   
          0.673
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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