STRINGSTRING
Psed_4220 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4220" - Luciferase-like protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4220Luciferase-like protein (332 aa)    
Predicted Functional Partners:
Psed_4096
F420-dependent oxidoreductase (312 aa)
   
          0.774
Psed_1379
F420-dependent oxidoreductase (304 aa)
   
          0.774
Psed_5898
Luciferase-like protein (297 aa)
   
          0.773
Psed_2479
Luciferase-like protein (299 aa)
   
          0.768
Psed_4225
Luciferase-like protein (347 aa)
 
          0.764
Psed_1333
Luciferase-like protein (367 aa)
   
          0.764
Psed_2167
Luciferase-like protein (370 aa)
   
          0.763
Psed_2174
Luciferase-like protein (367 aa)
   
          0.762
Psed_4433
Luciferase-like protein (303 aa)
   
          0.760
Psed_2238
F420-dependent oxidoreductase (275 aa)
   
          0.757
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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