STRINGSTRING
Psed_4231 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4231" - PGAP1 family protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4231PGAP1 family protein (283 aa)    
Predicted Functional Partners:
Psed_4232
Short-chain dehydrogenase/reductase SDR (329 aa)
              0.738
Psed_5172
Acyltransferase (469 aa)
   
          0.646
Psed_2920
Acyltransferase (475 aa)
   
          0.643
Psed_4230
Hypothetical protein (160 aa)
              0.630
Psed_4229
Nitrate reductase (817 aa)
              0.630
Psed_4228
Hypothetical protein (159 aa)
              0.497
Psed_0325
Glyoxalase/bleomycin resistance protein/dioxygenase (206 aa)
   
          0.470
Psed_4227
Hypothetical protein (181 aa)
              0.419
Psed_4441
Glyoxalase/bleomycin resistance protein/dioxygenase (192 aa)
   
          0.403
Psed_4182
Alpha/beta hydrolase (289 aa)
   
          0.400
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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