STRINGSTRING
Psed_4244 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4244" - Alpha/beta hydrolase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4244Alpha/beta hydrolase (241 aa)    
Predicted Functional Partners:
Psed_6620
Esterase (258 aa)
   
          0.742
Psed_4394
Hypothetical protein (234 aa)
 
          0.734
Psed_6455
Hypothetical protein (233 aa)
   
          0.707
Psed_4248
NADPH dehydrogenase (748 aa)
 
          0.546
Psed_4971
Glyoxalase/bleomycin resistance protein/dioxygenase (178 aa)
   
          0.535
Psed_4245
AraC family transcriptional regulator (305 aa)
              0.531
Psed_3175
Hypothetical protein (250 aa)
   
          0.501
Psed_4247
Nitrilase (335 aa)
              0.476
Psed_4249
Cupin (370 aa)
 
          0.473
Psed_4246
Benzoate--CoA ligase (555 aa)
              0.447
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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