STRINGSTRING
Psed_4245 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4245" - AraC family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4245AraC family transcriptional regulator (305 aa)    
Predicted Functional Partners:
Psed_4248
NADPH dehydrogenase (748 aa)
   
   
  0.767
Psed_4247
Nitrilase (335 aa)
 
          0.750
Psed_4246
Benzoate--CoA ligase (555 aa)
              0.710
Psed_4249
Cupin (370 aa)
 
        0.596
Psed_4244
Alpha/beta hydrolase (241 aa)
              0.531
Psed_4250
Ureidoglycolate lyase (278 aa)
   
   
  0.527
Psed_4251
Asp/Glu/hydantoin racemase; Catalyzes the conversion of maleate to fumarate (265 aa)
              0.513
Psed_4252
Thioesterase (146 aa)
              0.513
Psed_6622
LysR family transcriptional regulator (322 aa)
   
   
  0.472
Psed_6252
LysR family transcriptional regulator (298 aa)
   
   
  0.472
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (5%) [HD]