STRINGSTRING
Psed_4250 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4250" - Ureidoglycolate lyase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4250Ureidoglycolate lyase (278 aa)    
Predicted Functional Partners:
Psed_6167
Urea amidolyase (282 aa)
   
 
    0.908
alc
Allantoicase (309 aa)
     
 
    0.905
Psed_4249
Cupin (370 aa)
 
   
  0.904
Psed_4251
Asp/Glu/hydantoin racemase; Catalyzes the conversion of maleate to fumarate (265 aa)
              0.875
Psed_4252
Thioesterase (146 aa)
              0.861
Psed_4248
NADPH dehydrogenase (748 aa)
   
   
  0.699
Psed_4247
Nitrilase (335 aa)
   
        0.661
Psed_4246
Benzoate--CoA ligase (555 aa)
   
   
  0.661
Psed_6345
Homogentisate 12-dioxygenase (399 aa)
   
   
  0.637
Psed_0002
DNA polymerase III subunit beta; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (376 aa)
     
      0.609
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (37%) [HD]