STRINGSTRING
Psed_4290 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4290" - Alpha/beta hydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4290Alpha/beta hydrolase (234 aa)    
Predicted Functional Partners:
Psed_4291
4-oxalocrotonate tautomerase (71 aa)
              0.859
Psed_4289
Aromatic-ring-hydroxylating dioxygenase subunit beta (170 aa)
              0.859
Psed_4288
Amidohydrolase (327 aa)
              0.842
Psed_4293
2-oxopent-4-enoate hydratase (269 aa)
              0.829
Psed_4292
4-oxalocrotonate decarboxylase (256 aa)
              0.829
Psed_4287
2-chlorobenzoate 1,2-dioxygenase (429 aa)
 
          0.819
Psed_0072
Hypothetical protein (234 aa)
   
          0.778
Psed_4286
IclR family transcriptional regulator (262 aa)
              0.775
Psed_4040
Hypothetical protein (228 aa)
   
          0.774
Psed_3262
Hypothetical protein (238 aa)
   
          0.767
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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