STRINGSTRING
Psed_4295 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4295" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4295Hypothetical protein (266 aa)    
Predicted Functional Partners:
Psed_4215
Pyridoxamine 5’-phosphate oxidase-related FMN-binding protein (185 aa)
   
          0.605
Psed_4296
TetR family transcriptional regulator (200 aa)
              0.589
Psed_3168
Hypothetical protein (375 aa)
   
          0.579
Psed_2950
Hypothetical protein (389 aa)
   
          0.556
Psed_4294
Hypothetical protein (177 aa)
              0.538
Psed_6407
Hypothetical protein (203 aa)
   
          0.514
Psed_4290
Alpha/beta hydrolase (234 aa)
 
          0.500
Psed_6272
Integral membrane protein (364 aa)
   
          0.432
Psed_4297
Hypothetical protein (1703 aa)
              0.412
Psed_4293
2-oxopent-4-enoate hydratase (269 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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