STRINGSTRING
Psed_4309 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4309" - Haloalkane dehalogenase in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4309Haloalkane dehalogenase (313 aa)    
Predicted Functional Partners:
Psed_4985
Zinc-binding alcohol dehydrogenase protein (331 aa)
       
    0.900
Psed_5866
L-iditol 2-dehydrogenase (364 aa)
         
    0.900
Psed_5453
Molecular chaperone GroES (380 aa)
         
    0.900
Psed_1492
Alcohol dehydrogenase (373 aa)
         
    0.900
Psed_0735
PQQ-dependent dehydrogenase (562 aa)
         
    0.900
Psed_0661
Molecular chaperone GroES (370 aa)
         
    0.900
Psed_4308
Hypothetical protein (132 aa)
              0.859
Psed_5292
Haloalkane dehalogenase (309 aa)
   
   
 
0.850
Psed_4311
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid (310 aa)
              0.810
Psed_4310
Mandelate racemase (371 aa)
              0.810
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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