STRINGSTRING
Psed_4315 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4315" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4315LuxR family transcriptional regulator (888 aa)    
Predicted Functional Partners:
Psed_5542
Winged helix family transcriptional regulator (999 aa)
   
          0.606
Psed_4316
Hypothetical protein (200 aa)
              0.595
Psed_4317
9-cis-epoxycarotenoid dioxygenase (484 aa)
              0.592
Psed_4318
Hypothetical protein (182 aa)
              0.531
psuG
Pseudouridine-5’-phosphate glycosidase; Catalyzes the reversible cleavage of pseudouridine 5’- phosphate (PsiMP) to ribose 5-phosphate and uracil. Functions biologically in the cleavage direction, as part of a pseudouridine degradation pathway (309 aa)
 
          0.514
Psed_5850
Winged helix family transcriptional regulator (1138 aa)
   
          0.480
Psed_6639
LuxR family transcriptional regulator (221 aa)
 
 
  0.441
Psed_6437
LuxR family transcriptional regulator (369 aa)
   
          0.431
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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