STRINGSTRING
Psed_4319 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4319" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4319LuxR family transcriptional regulator (938 aa)    
Predicted Functional Partners:
Psed_5531
DNA translocase FtsK (497 aa)
   
          0.620
Psed_2617
Hypothetical protein (71 aa)
   
          0.578
Psed_5245
TetR family transcriptional regulator (216 aa)
   
          0.562
Psed_3438
Cupin (154 aa)
   
          0.562
Psed_4322
Dihydrolipoyl dehydrogenase (460 aa)
              0.546
Psed_4321
Hypothetical protein (115 aa)
              0.546
Psed_4320
Alcohol dehydrogenase (251 aa)
              0.546
Psed_6412
Histidine kinase (364 aa)
   
          0.544
Psed_3967
GCN5-like N-acetyltransferase (365 aa)
   
          0.537
Psed_3560
Carboxymuconolactone decarboxylase (163 aa)
   
          0.533
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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