STRINGSTRING
Psed_4384 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4384" - Type IV secretory pathway VirD4 protein-like protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4384Type IV secretory pathway VirD4 protein-like protein (624 aa)    
Predicted Functional Partners:
Psed_4386
Hypothetical protein (142 aa)
              0.859
Psed_4385
Hypothetical protein (120 aa)
              0.859
Psed_4380
TrwC relaxase (1457 aa)
 
          0.843
Psed_0035
TrwC relaxase (1465 aa)
 
          0.769
Psed_4383
Hypothetical protein (222 aa)
              0.589
Psed_0311
TetR family transcriptional regulator (216 aa)
   
          0.584
Psed_4382
Hypothetical protein (132 aa)
              0.583
Psed_4381
Hypothetical protein (306 aa)
              0.583
Psed_1216
Type IV secretory pathway VirB4 components-like protein (636 aa)
   
          0.539
Psed_6412
Histidine kinase (364 aa)
   
          0.456
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (6%) [HD]