STRINGSTRING
Psed_4393 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4393" - Integrase protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4393Integrase protein (591 aa)    
Predicted Functional Partners:
Psed_0874
Integrase protein (397 aa)
   
          0.684
Psed_4395
Hypothetical protein (128 aa)
 
          0.648
Psed_4396
Hypothetical protein (146 aa)
 
          0.635
Psed_5234
Integrase protein (408 aa)
   
          0.607
Psed_4394
Hypothetical protein (234 aa)
         
  0.592
Psed_4392
GntR family transcriptional regulator (147 aa)
              0.575
Psed_4399
Hypothetical protein (395 aa)
              0.545
Psed_4398
TIM-barrel signal transduction protein (290 aa)
              0.545
Psed_4397
Polyketide cyclase/dehydrase (146 aa)
              0.545
Psed_1127
DNA translocase FtsK (749 aa)
 
          0.521
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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