STRINGSTRING
Psed_4405 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4405" - Tetracycline repressor in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4405Tetracycline repressor (237 aa)    
Predicted Functional Partners:
Psed_4406
Major facilitator superfamily protein (478 aa)
 
          0.689
Psed_4410
Regulatory protein MarR (163 aa)
   
          0.524
Psed_3558
PucR family transcriptional regulator (375 aa)
   
          0.465
Psed_1423
TetR family transcriptional regulator (204 aa)
   
          0.450
Psed_2485
TetR family transcriptional regulator (197 aa)
   
          0.438
Psed_1042
Regulatory protein MarR (164 aa)
   
          0.434
Psed_6627
TetR family transcriptional regulator (244 aa)
   
          0.429
Psed_0573
Hydrolase transmembrane protein (333 aa)
   
          0.415
Psed_1393
TetR family transcriptional regulator (225 aa)
   
          0.413
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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