STRINGSTRING
Psed_4416 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4416" - Alanine racemase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4416Alanine racemase (397 aa)    
Predicted Functional Partners:
Psed_4419
FAD-linked oxidoreductase (439 aa)
          0.961
Psed_4418
TetR family transcriptional regulator (215 aa)
 
          0.905
Psed_4417
Major facilitator superfamily protein (394 aa)
              0.866
Psed_4420
NUDIX hydrolase (152 aa)
              0.605
Psed_4421
Alpha/beta hydrolase (286 aa)
              0.521
Psed_6028
D-lactate dehydrogenase (1050 aa)
              0.519
Psed_5593
D-lactate dehydrogenase (982 aa)
              0.519
Psed_4952
D-lactate dehydrogenase (929 aa)
              0.519
Psed_4551
Alkylglycerone-phosphate synthase (522 aa)
 
          0.479
Psed_3631
Hypothetical protein (288 aa)
   
        0.442
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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