STRINGSTRING
Psed_4429 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4429" - Major facilitator superfamily protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4429Major facilitator superfamily protein (409 aa)    
Predicted Functional Partners:
Psed_4430
AraC family transcriptional regulator (319 aa)
              0.620
Psed_4354
Rhodanese-like protein (221 aa)
 
          0.478
Psed_3430
Riboflavin biosynthesis protein RibD (385 aa)
              0.475
Psed_4428
Cytochrome P450 (404 aa)
              0.466
Psed_4431
Linalool 8-monooxygenase (413 aa)
              0.434
Psed_3976
Hypothetical protein (240 aa)
   
          0.430
Psed_6295
LmbE family protein (241 aa)
   
          0.405
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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