STRINGSTRING
Psed_4442 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4442" - Regulatory protein MarR in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4442Regulatory protein MarR (226 aa)    
Predicted Functional Partners:
Psed_4027
Regulatory protein MarR (154 aa)
   
          0.721
Psed_6449
Monooxygenase FAD-binding protein (380 aa)
   
          0.689
Psed_5066
Monooxygenase FAD-binding protein (521 aa)
   
          0.657
Psed_4246
Benzoate--CoA ligase (555 aa)
   
          0.627
Psed_4410
Regulatory protein MarR (163 aa)
   
          0.626
Psed_6338
Monooxygenase FAD-binding protein (511 aa)
   
          0.609
Psed_4249
Cupin (370 aa)
   
          0.608
Psed_4248
NADPH dehydrogenase (748 aa)
   
          0.534
Psed_4441
Glyoxalase/bleomycin resistance protein/dioxygenase (192 aa)
              0.514
Psed_5641
Regulatory protein MarR (182 aa)
   
          0.436
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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