STRINGSTRING
Psed_4443 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4443" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4443Hypothetical protein (348 aa)    
Predicted Functional Partners:
Psed_0092
Hypothetical protein (322 aa)
   
          0.552
Psed_4715
Hypothetical protein (212 aa)
   
          0.551
Psed_6577
Hypothetical protein (154 aa)
   
          0.536
Psed_4380
TrwC relaxase (1457 aa)
   
          0.513
Psed_0035
TrwC relaxase (1465 aa)
   
          0.501
Psed_6309
Hypothetical protein (303 aa)
   
          0.487
Psed_6323
Hypothetical protein (363 aa)
   
          0.482
Psed_3002
TetR family transcriptional regulator (141 aa)
   
          0.471
Psed_6409
Hypothetical protein (316 aa)
   
          0.460
Psed_0720
Hypothetical protein (223 aa)
   
          0.460
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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