STRINGSTRING
Psed_4445 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4445" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4445TetR family transcriptional regulator (202 aa)    
Predicted Functional Partners:
Psed_4444
Alpha/beta hydrolase (263 aa)
 
          0.773
Psed_2002
TetR family transcriptional regulator (187 aa)
   
          0.574
Psed_2673
TetR family transcriptional regulator (231 aa)
   
          0.540
Psed_2735
TetR family transcriptional regulator (200 aa)
   
          0.526
Psed_6275
TetR family transcriptional regulator (212 aa)
   
          0.461
Psed_4496
Hypothetical protein (375 aa)
   
          0.454
Psed_1699
TetR family transcriptional regulator (251 aa)
   
          0.433
Psed_2736
Hypothetical protein (226 aa)
   
          0.432
Psed_2699
TetR family transcriptional regulator (207 aa)
   
          0.404
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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