STRINGSTRING
Psed_4456 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4456" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4456Hypothetical protein (187 aa)    
Predicted Functional Partners:
Psed_4458
Hypothetical protein (205 aa)
              0.630
Psed_4457
Deoxyguanosinetriphosphate triphosphohydrolase-like protein (432 aa)
              0.630
rplQ
50S ribosomal protein L17 (245 aa)
     
        0.558
Psed_6410
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (219 aa)
   
          0.542
Psed_3847
Polyketide cyclase/dehydrase (163 aa)
   
          0.519
Psed_4522
Hypothetical protein (197 aa)
   
          0.513
Psed_2329
Peroxidase (212 aa)
   
   
  0.502
Psed_5863
Carboxymuconolactone decarboxylase (198 aa)
 
          0.492
Psed_6268
acyl-CoA dehydrogenase (346 aa)
   
        0.468
Psed_6528
Glycosyl hydrolase protein (350 aa)
   
          0.443
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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