STRINGSTRING
Psed_4466 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4466" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4466Hypothetical protein (460 aa)    
Predicted Functional Partners:
Psed_4467
Hypothetical protein (332 aa)
 
       
0.933
Psed_1955
Glutamate synthase (1522 aa)
   
   
  0.890
rpmA
50S ribosomal protein L27 (85 aa)
   
      0.633
Psed_3979
Fe-S type, tartrate/fumarate subfamily hydro-lyase subunit alpha (551 aa)
   
        0.591
Psed_4915
Glutamate synthase subunit alpha domain-containing protein (234 aa)
   
        0.568
Psed_4916
Glutamate synthase (440 aa)
   
        0.565
Psed_3761
Glutamate synthase (540 aa)
   
        0.565
Psed_4914
Glutamine amidotransferase (226 aa)
   
        0.557
Psed_3166
Hypothetical protein (350 aa)
 
     
0.554
Psed_4465
Sulfate-transporting ATPase (306 aa)
   
   
  0.535
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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