STRINGSTRING
Psed_4499 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4499" - Lipase class 2 in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4499Lipase class 2 (265 aa)    
Predicted Functional Partners:
Psed_4503
Phosphonate-transporting ATPase (242 aa)
              0.760
Psed_4502
Hypothetical protein (410 aa)
              0.760
Psed_4504
RND family efflux transporter MFP subunit (484 aa)
              0.759
Psed_4501
Secretion protein HlyD family protein (787 aa)
              0.759
Psed_4500
Oxygen-independent coproporphyrinogen III oxidase (406 aa)
              0.759
Psed_4496
Hypothetical protein (375 aa)
   
          0.745
Psed_3414
Hypothetical protein (264 aa)
   
          0.687
Psed_3140
ArsR family transcriptional regulator (201 aa)
   
          0.564
Psed_1976
Lysyl oxidase-like protein (317 aa)
   
          0.563
Psed_1713
crotonyl-CoA reductase (443 aa)
   
        0.550
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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