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Psed_4520 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4520" - Phenylacetic acid degradation-like protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4520Phenylacetic acid degradation-like protein (140 aa)    
Predicted Functional Partners:
Psed_4521
enoyl-CoA hydratase (265 aa)
   
 
  0.761
Psed_0649
3-hydroxybutyryl-CoA epimerase (720 aa)
   
 
  0.742
Psed_3588
DNA polymerase I (939 aa)
         
  0.637
Psed_5917
long-chain-fatty-acid--CoA ligase (633 aa)
 
 
 
  0.575
Psed_2619
o-succinylbenzoate--CoA ligase (511 aa)
 
 
 
  0.567
Psed_6028
D-lactate dehydrogenase (1050 aa)
   
   
  0.542
Psed_5593
D-lactate dehydrogenase (982 aa)
   
   
  0.542
Psed_4952
D-lactate dehydrogenase (929 aa)
   
   
  0.542
Psed_6672
Polynucleotide adenylyltransferase (545 aa)
     
      0.533
Psed_6274
AMP-dependent synthetase/ligase (494 aa)
   
   
  0.509
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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