STRINGSTRING
Psed_4552 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4552" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4552TetR family transcriptional regulator (186 aa)    
Predicted Functional Partners:
Psed_4553
Glycerol-3-phosphate dehydrogenase (505 aa)
 
          0.951
Psed_4551
Alkylglycerone-phosphate synthase (522 aa)
 
          0.929
Psed_4550
Hypothetical protein (288 aa)
 
          0.822
Psed_0192
Nitroreductase (221 aa)
   
          0.592
Psed_0832
LuxR family transcriptional regulator (239 aa)
   
          0.583
Psed_3344
G-D-S-L family lipolytic protein (305 aa)
   
          0.475
Psed_2840
Hypothetical protein (72 aa)
   
          0.452
Psed_6029
Short-chain dehydrogenase/reductase SDR (331 aa)
   
          0.437
Psed_5389
Secretion protein snm4 (488 aa)
   
          0.418
Psed_0090
Hypothetical protein (222 aa)
   
          0.409
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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