STRINGSTRING
Psed_4576 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4576" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4576TetR family transcriptional regulator (257 aa)    
Predicted Functional Partners:
Psed_4577
Cold-shock protein DNA-binding protein (66 aa)
              0.609
Psed_3337
Peptidase M48 Ste24p (301 aa)
   
          0.556
Psed_3437
Hypothetical protein (65 aa)
   
          0.532
Psed_5958
Agarase (371 aa)
   
          0.527
Psed_1141
Bifunctional deaminase-reductase domain-containing protein (211 aa)
   
          0.481
Psed_4578
stearoyl-CoA 9-desaturase (315 aa)
              0.468
Psed_6178
Hypothetical protein (202 aa)
   
          0.444
Psed_0321
TetR family transcriptional regulator (251 aa)
   
          0.432
Psed_0660
anti-sigma-K factor RskA (216 aa)
   
          0.409
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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