STRINGSTRING
Psed_4629 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4629" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4629Hypothetical protein (198 aa)    
Predicted Functional Partners:
Psed_4631
Transcriptional regulator (226 aa)
 
          0.793
Psed_4633
Cupin (132 aa)
 
          0.743
Psed_4632
Hypothetical protein (141 aa)
 
          0.719
Psed_6335
C4-dicarboxylate transporter/malic acid transport protein (342 aa)
   
          0.687
Psed_4630
4Fe-4S ferredoxin (114 aa)
              0.673
Psed_3236
C4-dicarboxylate transporter/malic acid transport protein (336 aa)
   
          0.639
Psed_5081
DoxX family protein (142 aa)
 
          0.499
Psed_4628
DNA translocase FtsK (782 aa)
              0.448
Psed_3202
Transcriptional regulator (221 aa)
 
          0.426
Psed_0993
Transposase IS4 family protein (294 aa)
              0.409
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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