STRINGSTRING
Psed_4636 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4636" - GntR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4636GntR family transcriptional regulator (233 aa)    
Predicted Functional Partners:
Psed_4639
Isochorismatase hydrolase (206 aa)
   
        0.875
Psed_4637
5-oxoprolinase (681 aa)
              0.869
Psed_4638
5-oxoprolinase (632 aa)
              0.867
Psed_4635
Isocitrate lyase and phosphorylmutase (300 aa)
         
  0.775
Psed_2548
GntR family transcriptional regulator (246 aa)
   
   
  0.765
Psed_2753
GntR family transcriptional regulator (261 aa)
   
   
  0.699
Psed_0620
GntR family transcriptional regulator (247 aa)
   
   
  0.666
Psed_3766
GntR family transcriptional regulator (233 aa)
   
   
  0.664
Psed_6209
GntR family transcriptional regulator (252 aa)
   
   
  0.661
Psed_0684
GntR family transcriptional regulator (260 aa)
   
   
  0.630
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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