STRINGSTRING
Psed_4653 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4653" - Hypothetical protein in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4653Hypothetical protein (208 aa)    
Predicted Functional Partners:
Psed_5874
ErfK/YbiS/YcfS/YnhG family protein (407 aa)
   
          0.680
Psed_6522
Hypothetical protein (137 aa)
   
          0.615
Psed_3060
OB-fold tRNA/helicase-type nucleic acid binding-protein (125 aa)
   
          0.601
Psed_4651
Beta-lactamase domain-containing protein (594 aa)
              0.586
Psed_2142
Hypothetical protein (144 aa)
   
          0.575
Psed_4652
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta- semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA) (313 aa)
              0.573
Psed_4450
Hypothetical protein (126 aa)
   
          0.557
Psed_0597
ErfK/YbiS/YcfS/YnhG family protein (395 aa)
   
          0.539
Psed_3894
ErfK/YbiS/YcfS/YnhG family protein (423 aa)
   
          0.515
Psed_6681
Hypothetical protein (214 aa)
   
          0.508
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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