STRINGSTRING
Psed_4665 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_4665" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_4665Hypothetical protein (233 aa)    
Predicted Functional Partners:
Psed_2768
Metallophosphoesterase (262 aa)
   
          0.683
Psed_0990
ABC transporter integral membrane protein (283 aa)
   
          0.648
Psed_2762
Hypothetical protein (465 aa)
   
          0.643
Psed_4697
Hypothetical protein (241 aa)
   
          0.622
Psed_4666
Riboflavin biosynthesis protein RibF (308 aa)
              0.611
Psed_0165
Hypothetical protein (294 aa)
   
          0.611
Psed_1173
Lytic transglycosylase catalytic (269 aa)
   
          0.593
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (298 aa)
              0.591
Psed_5297
Hypothetical protein (358 aa)
   
          0.573
Psed_0447
Hypothetical protein (276 aa)
   
          0.559
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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